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Molecular Viewer

Interactive display of three-dimensional coordinates from user supplied PDB file using JSMol.

Accessibility

The Molecular Viewer module is accessible from the Interact section of the main menu.

Basic Usage

The purpose of the module is to provide users a tool to render and measure the 3D structures of the input PDB file using JSMol.

Notes

Screen Shots and Description of Input Fields

This example shows the 3D image of HIV-1 gag protein along with the JSMol menu accessed by right clicking a mouse.

inline image

Files Used and Created in Example

hiv1_gag.pdb

Reference(s) and Citations

  1. Jmol: an open-source Java viewer for chemical structures in 3D. http://www.jmol.org/

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