SASSIE: Documentation

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Introduction

Using the new Contrast suite with SASSIE-web

The original Contrast Calculator module has moved to the new Contrast software suite. Read this note before using Contrast for the first time so your SASSIE-web and Contrast accounts, projects, and files share the same workspace.

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How to cite SASSIE

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SASSIE modules at a glance

SASSIE-web: Basic Usage

SASSIE-GUI: Basic Usage

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SASSIE Training

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SASSIE-web: Quick Start

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How to Use Visual Molecular Dynamics (VMD)

Notes on Starting Structures and Force Fields

Sample Workflows

How to Use Atomic Constraints

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Module Specific Help:

Tools

Contrast Calculator

Align

Data Interpolation

Extract Utilities

Merge Utilities

Build

Build Utilities BETA

PDB Scan

PDB Rx ALPHA

Interact

Molecular Viewer

Simulate

Monomer Monte Carlo

Complex Monte Carlo

Torsion Angle Monte Carlo BETA

Energy Minimization

Torsion Angle MD

ProDy

Docking ALPHA

Two-Body Grid

Calculate

SasCalc

Capriqorn ALPHA

SasCalc-PBC ALPHA

Xtal2sas RETIRED

Cryson RETIRED

Crysol

SCT Calculate RETIRED

SLD MOL

EM to SANS

Analyze

Altens BETA

Chi-Square Filter

Bayesian Ensemble Estimator ALPHA

Eros ALPHA

SCT Analyze RETIRED

Density Plot

APBS

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Modules Under Development:

Beta modules

Alpha modules

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Legacy Modules:

Retired modules

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