SASSIE: Documentation


Introduction


SASSIE modules at a glance

SASSIE-web: Basic Usage

SASSIE-GUI: Basic Usage


SASSIE Training


SASSIE-web: Quick Start


How to Use Visual Molecular Dynamics (VMD)

Notes on Starting Structures and Force Fields

Sample Workflows

How to Use Atomic Constraints


Module Specific Help:

Tools

Contrast Calculator

Align

Data Interpolation

Extract Utilities

Merge Utilities

Build

Build Utilities BETA

PDB Scan

PDB Rx ALPHA

Interact

Molecular Viewer

Simulate

Monomer Monte Carlo

Complex Monte Carlo

Torsion Angle Monte Carlo BETA

Energy Minimization

Torsion Angle MD

ProDy BETA

Docking ALPHA

Two-Body Grid

Calculate

SasCalc BETA

Capriqorn ALPHA

SasCalc-PBC ALPHA

Xtal2sas RETIRED

Cryson RETIRED

Crysol

SCT Calculate

SLD MOL

EM to SANS

Analyze

Chi-Square Filter

SCT Analyze

Density Plot

APBS


Modules Under Development:

Beta modules

Alpha modules


Legacy Modules:

Retired modules


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